Difference between revisions of "Acknowledgments"

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(Meetings)
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==Project team==
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{| width="90%"
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|- align="left" valign="top" style="font-weight: bold;"
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| style="width: 33%;" | National Evolutionary Synthesis Center (NESCent)
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| style="width: 33%;" | University of South Dakota
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| style="width: 33%;" | University of Oregon (Zebrafish Information Network)
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|- valign="top"
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| rowspan="4" |
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* [http://visionlab.web.unc.edu/| Todd Vision] (also University of North Carolina at Chapel Hill)
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* [[User:Hlapp| Hilmar Lapp]]
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* [http://www.mendeley.com/profiles/jim-balhoff/ Jim Balhoff]
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* Prashanti Manda
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|
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* Paula Mabee
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* Wasila Dahdul
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* Alex Dececchi
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| rowspan="4" |
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* [http://zfin.org/cgi-bin/webdriver?MIval=aa-persview.apg&OID=ZDB-PERS-960805-676 Monte Westerfield]
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* Yvonne Bradford
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* Ceri Van Slyke
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|- style="height: 1px;"
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|
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|- align="left" style="font-weight: bold; "
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| Oregon Health & Science University
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|- valign="top"
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|
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* Melissa Haendel
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|- style="height: 10px;"
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|
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|- align="left" style="font-weight: bold; "
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| University of Chicago || Mouse Genome Informatics || Cincinnati Children's Hospital Medical Center
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|- valign="top"
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|
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* Paul Sereno
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* Nizar Ibrahim
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|
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* Judith Blake
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* Terry Hayamizu
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|
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* Aaron Zorn (Xenbase)
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* Christina James-Zorn (Xenbase)
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|- style="height: 10px;"
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|
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|- align="left" style="font-weight: bold; "
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| California Academy of Sciences || University of Arizona || Lawrence Berkeley National Labs ||
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|- valign="top"
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|
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* David Blackburn
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|
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* [http://sites.google.com/site/biosemanticsproject/project-overview Hong Cui]
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* [http://www.linkedin.com/pub/zilong-chang/3a/348/585 Zilong Chang]
 +
|
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* Chris Mungall
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|}
 +
 +
==Advisory Board==
 +
 +
=== Members ===
 +
* John Day-Richter (Google)
 +
* Brian K. Hall (Dalhousie University)
 +
* Cyndy Parr (Encyclopedia of Life) (2012-)
 +
* Paul Schofield (University of Cambridge)
 +
* Peter Vize (University of Calgary)
 +
* Alan Ruttenberg (University of Buffalo) (2011-2012)
 +
 +
=== Meetings ===
 +
 +
* [[WG:All-Hands_Meeting_2011-11-11| Advisory Board meeting (electronic) on Nov. 11, 2011]] (by conference call):  [http://docs.google.com/document/d/1oE9Mp-UVu6r-Ci7G3EHTRaBuXsapyqm7DQ-Q0FjwCyo/edit?hl=en_US agenda] and [[Media:ABmeeting 2011-11-11 notes.pdf| notes]]
 +
* Advisory Board meeting (face to face): Friday, April 27, 2012; Phenoscape project meeting will precede this on April 25, 26
 +
* [[WG:Advisory Board Meeting 2012-12-04| Advisory Board meeting (electronic) on Dec. 4, 2012]]
 +
 
==Contributors==
 
==Contributors==
 
The following individuals have contributed to Phenoscape ontology development, data curation, workshops, and data entry:
 
The following individuals have contributed to Phenoscape ontology development, data curation, workshops, and data entry:
Line 206: Line 278:
 
* Brad Schanche, University of South Dakota
 
* Brad Schanche, University of South Dakota
 
* Michael Wallinga, University of South Dakota
 
* Michael Wallinga, University of South Dakota
 
==Project team==
 
 
{| width="90%"
 
|- align="left" valign="top" style="font-weight: bold;"
 
| style="width: 33%;" | National Evolutionary Synthesis Center (NESCent)
 
| style="width: 33%;" | University of South Dakota
 
| style="width: 33%;" | University of Oregon (Zebrafish Information Network)
 
|- valign="top"
 
| rowspan="4" |
 
* Todd Vision (also University of North Carolina at Chapel Hill)
 
* [[User:Hlapp| Hilmar Lapp]]
 
* [http://www.mendeley.com/profiles/jim-balhoff/ Jim Balhoff]
 
* Peter Midford
 
|
 
* Paula Mabee
 
* Wasila Dahdul
 
* Alex Dececchi
 
| rowspan="4" |
 
* [http://zfin.org/cgi-bin/webdriver?MIval=aa-persview.apg&OID=ZDB-PERS-960805-676 Monte Westerfield]
 
* Yvonne Bradford
 
* Ceri Van Slyke
 
|- style="height: 1px;"
 
|
 
|- align="left" style="font-weight: bold; "
 
| Oregon Health & Science University
 
|- valign="top"
 
|
 
* Melissa Haendel
 
|- style="height: 10px;"
 
|
 
|- align="left" style="font-weight: bold; "
 
| University of Chicago || Mouse Genome Informatics || Cincinnati Children's Hospital Medical Center
 
|- valign="top"
 
|
 
* Paul Sereno
 
* Nizar Ibrahim
 
|
 
* Judith Blake
 
* Terry Hayamizu
 
|
 
* Aaron Zorn (Xenbase)
 
* Christina James-Zorn (Xenbase)
 
|- style="height: 10px;"
 
|
 
|- align="left" style="font-weight: bold; "
 
| California Academy of Sciences || University of Arizona || Lawrence Berkeley National Labs ||
 
|- valign="top"
 
|
 
* David Blackburn
 
|
 
* [http://sites.google.com/site/biosemanticsproject/project-overview Hong Cui]
 
* [http://www.linkedin.com/pub/zilong-chang/3a/348/585 Zilong Chang]
 
|
 
* Chris Mungall
 
|}
 
  
 
==Data sources==
 
==Data sources==
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* [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI taxonomy] - taxonomy for groups not otherwise covered
 
* [http://www.ncbi.nlm.nih.gov/Taxonomy/ NCBI taxonomy] - taxonomy for groups not otherwise covered
 
* [http://www.catalogueoflife.org/ Catalogue of Life] - source of taxonomic synonyms
 
* [http://www.catalogueoflife.org/ Catalogue of Life] - source of taxonomic synonyms
 
==Advisory Board==
 
 
=== Members ===
 
* John Day-Richter (Google)
 
* Brian K. Hall (Dalhousie University)
 
* Cyndy Parr (Encyclopedia of Life) (2012-)
 
* Paul Schofield (University of Cambridge)
 
* Peter Vize (University of Calgary)
 
* Alan Ruttenberg (University of Buffalo) (2011-2012)
 
 
=== Meetings ===
 
 
* [[WG:All-Hands_Meeting_2011-11-11| Advisory Board meeting (electronic) on Nov. 11, 2011]] (by conference call):  [http://docs.google.com/document/d/1oE9Mp-UVu6r-Ci7G3EHTRaBuXsapyqm7DQ-Q0FjwCyo/edit?hl=en_US agenda] and [[Media:ABmeeting 2011-11-11 notes.pdf| notes]]
 
* Advisory Board meeting (face to face): Friday, April 27, 2012; Phenoscape project meeting will precede this on April 25, 26
 
* [[WG:Advisory Board Meeting 2012-12-04| Advisory Board meeting (electronic) on Dec. 4, 2012]]
 
  
 
==Funding==
 
==Funding==

Revision as of 19:59, 27 February 2013

Project team

National Evolutionary Synthesis Center (NESCent) University of South Dakota University of Oregon (Zebrafish Information Network)
  • Paula Mabee
  • Wasila Dahdul
  • Alex Dececchi
Oregon Health & Science University
  • Melissa Haendel
University of Chicago Mouse Genome Informatics Cincinnati Children's Hospital Medical Center
  • Paul Sereno
  • Nizar Ibrahim
  • Judith Blake
  • Terry Hayamizu
  • Aaron Zorn (Xenbase)
  • Christina James-Zorn (Xenbase)
California Academy of Sciences University of Arizona Lawrence Berkeley National Labs
  • David Blackburn
  • Chris Mungall

Advisory Board

Members

  • John Day-Richter (Google)
  • Brian K. Hall (Dalhousie University)
  • Cyndy Parr (Encyclopedia of Life) (2012-)
  • Paul Schofield (University of Cambridge)
  • Peter Vize (University of Calgary)
  • Alan Ruttenberg (University of Buffalo) (2011-2012)

Meetings

Contributors

The following individuals have contributed to Phenoscape ontology development, data curation, workshops, and data entry:

Phenoscape-ext Contributors

  • Wasila Dahdul, University of South Dakota
  • T. Alexander Dececchi, University of South Dakota
  • Paula Mabee, University of South Dakota
  • Chris Mungall, Lawrence Berkeley Labs
  • Melissa Haendel, Oregon Health Sciences University
  • Nizar Ibrahim, University of Chicago

Teleost Anatomy Ontology (TAO) Contributors

  • Gloria Arratia, The University of Kansas
  • David Blackburn, University of Kansas
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Wasila Dahdul, University of South Dakota
  • Mário de Pinna, Universidade de São Paulo
  • Alexander Diehl, University at Buffalo, The State University of New York
  • Jeff Engeman, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, OHSU
  • Brian Hall, Dalhousie University
  • Eric Hilton, Virginia Institute of Marine Science
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Richard Mayden, St. Louis University
  • Martin Ringwald, The Jackson Laboratory
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Erik Segerdell, OHSU
  • Brian Sidlauskas, Oregon State University
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle
  • Ceri Van Slyke, Zebrafish Information Network
  • Richard Vari, National Museum of Natural History, Smithsonian Institution
  • Matt Vickaryous, University of Guelph
  • Jacqueline Webb, University of Rhode Island
  • Edward Wiley, The University of Kansas

Teleost Taxonomy Ontology (TTO) Contributors

  • Nicolas Bailly, WorldFish Center, Philippines
  • Stan Blum, California Academy of Sciences
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Wasila Dahdul, University of South Dakota
  • Bill Eschmeyer, California Academy of Sciences
  • Rainer Froese, Leibniz-Institute of Marine Sciences
  • Terry Grande, Loyola University, Chicago
  • Eric Hilton, Virginia Institute of Marine Science
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Richard Mayden, St. Louis University

Vertebrate Skeletal Anatomy Ontology (VSAO) Contributors

  • James P. Balhoff, National Evolutionary Synthesis Center
  • David C. Blackburn, California Academy of Sciences
  • Wasila Dahdul, University of South Dakota
  • Alexander D. Diehl, University at Buffalo, The State University of New York
  • Melissa A. Haendel, Oregon Health & Science University
  • Brian K. Hall, Dalhousie University
  • Terry Hayamizu, The Jackson Laboratory
  • Nizar Ibrahim, University of Chicago
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • John G. Lundberg, The Academy of Natural Sciences
  • Paula M. Mabee, University of South Dakota
  • Christopher J. Mungall, Lawrence Berkeley National Laboratory
  • Martin Ringwald, The Jackson Laboratory
  • Erik Segerdell, Oregon Health & Science University
  • Paul Sereno, University of Chicago
  • Ceri E. Van Slyke, Zebrafish Information Network
  • Matthew K. Vickaryous, University of Guelph
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Christina James Zorn, Xenbase

Curators (Data Annotation)

  • Miles Coburn, John Carroll University
  • Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
  • Wasila Dahdul, University of South Dakota
  • Jeff Engeman, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Terry Grande, Loyola University, Chicago
  • Eric Hilton, Virginia Institute of Marine Science
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Richard Mayden, St. Louis University
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle

Phenoscape Workshop Participants & Contributors

  • Arhat Abzhanov, Harvard University
  • Gloria Arratia, The University of Kansas
  • Michael Ashburner, University of Cambridge
  • Jim Balhoff, National Evolutionary Synthesis Center
  • Rüdiger Bieler, Field Museum, Chicago
  • David Blackburn, University of Kansas
  • Judith Blake, The Jackson Laboratory
  • Stan Blum, California Academy of Sciences
  • Miles Coburn, John Carroll University
  • Kevin Conway, St. Louis University
  • Quentin Cronk, The University of British Columbia
  • Wasila Dahdul, University of South Dakota
  • Mário de Pinna, Universidade de São Paulo
  • Andy Deans, North Carolina State University
  • Alexander Diehl, University at Buffalo, The State University of New York
  • Torsten Dikow, Field Museum, Chicago
  • Jeff Engeman, University of South Dakota
  • George Gkoutos, University of Cambridge
  • Lance Grande, Field Museum, Chicago
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, Zebrafish Information Network
  • Brian Hall, Dalhousie University
  • Eric Hilton, Virginia Institute of Marine Science
  • Robert Ho, University of Chicago
  • Hopi Hoekstra, Harvard University
  • Hans Hofmann, University of Texas at Austin
  • Elizabeth Jockusch, Univesity of Connecticut
  • Elizabeth Kellogg, University of Missouri, St. Louis
  • Chuck Kimmel, University of Oregon
  • Cartik Kothari, National Evolutionary Synthesis Center
  • Hilmar Lapp, National Evolutionary Synthesis Center
  • Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Paula Mabee, University of South Dakota
  • Anne Maglia, Missouri University of Science and Technology
  • Joanna Mandecki, University of Chicago
  • Austin Mast, Florida State University
  • Richard Mayden, St. Louis University
  • Charlene McCord, University of Chicago
  • Peter Midford, National Evolutionary Synthesis Center
  • Chris Mungall, Berkeley Bioinformatics and Ontology Project
  • Vicky Prince, University of Chicago
  • Martin Ramirez, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia," Argentina
  • Sue Rhee, Carnegie Institution
  • Martin Ringwald, The Jackson Laboratory
  • Nelson Rios, Tulane University
  • Callum Ross, University of Chicago
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Erik Segerdell, University of Calgary
  • Paul Sereno, University of Chicago
  • Brian Sidlauskas, Oregon State University
  • Barry Smith, University at Buffalo
  • David Stern, Princeton University
  • Margaret Thayer, Field Museum, Chicago
  • Ceri Van Slyke, Zebrafish Information Network
  • Matt Vickaryous, University of Guelph
  • Todd Vision, National Evolutionary Synthesis Center and University of North Carolina at Chapel Hill
  • Peter Vize, University of Calgary
  • Gunter Wagner, Yale University
  • Michael Wallinga, University of South Dakota
  • Nicole Washington, Lawrence Berkeley National Lab
  • Monte Westerfield, Zebrafish Information Network and University of Oregon
  • Mark Westneat, Field Museum, Chicago
  • Edward Wiley, The University of Kansas
  • Matt Yoder, North Carolina State University

Software testing

  • Angel Amores, University of Oregon
  • Carole Baldwin, Smithsonian National Museum of Natural History
  • Susan Bassham, University of Oregon
  • Judith Blake, The Jackson Laboratory
  • Miles Coburn, John Carroll University
  • William Cresko, University of Oregon
  • April DeLaurier, University of Oregon
  • Jeff Engeman, University of South Dakota
  • Vladimir Gapeyev, National Evolutionary Synthesis Center
  • Terry Grande, Loyola University, Chicago
  • Melissa Haendel, Zebrafish Information Network
  • Eric Hilton, Virginia Institute of Marine Science
  • Ryan Kerney, Dalhousie University
  • Suzanna Lewis, Berkeley Bioinformatics and Ontology Project
  • Daniel Lumbantobing, George Washington University
  • John Lundberg, The Academy of Natural Sciences, Philadelphia
  • Anne Maglia, Missouri University of Science and Technology
  • Richard Mayden, St. Louis University
  • Julie Mounts, Smithsonian National Museum of Natural History
  • Conor O'Brien, University of Oregon
  • Lynne Parenti, Smithsonian National Museum of Natural History
  • Rafael de Sá, University of Richmond
  • Mark Sabaj Pérez, The Academy of Natural Sciences, Philadelphia
  • Brian Sidlauskas, Oregon State University
  • Jiakun Song, Smithsonian National Museum of Natural History
  • Jared Talbot, University of Oregon
  • Sandrine Tercerie, Muséum National d'Histoire Naturelle
  • Tom Titus, University of Oregon
  • Linda Trueb, University of Kansas
  • Ceri Van Slyke, Zebrafish Information Network
  • David Wake, University of California, Berkeley
  • Marvalee Wake, University of California, Berkeley
  • Matt Yoder, North Carolina State University

Students

  • Alex Ahearn, Duke University
  • Alyssa Block, University of South Dakota
  • Jordan Catlett, University of South Dakota
  • Sonia Crichigno, Centro Regional Universitario Bariloche, (Univ. Nac. del Comahue), Argentina
  • Jeff Engeman, University of South Dakota
  • Benjamin Frable, National Museum of Natural History, Smithsonian Institution
  • Char Green, University of South Dakota
  • Ericka Grey, University of South Dakota
  • Jun Hong Kim, Duke University
  • Jonathan Lee, Duke University
  • Leah Mabee, University of South Dakota
  • Mtakai Ngara, International Institute of Tropical Agriculture, Nairobi, Kenya
  • Carla Perez, Duke University
  • Carin Rambow, University of South Dakota
  • Du Rui, University of South Dakota
  • Brad Schanche, University of South Dakota
  • Michael Wallinga, University of South Dakota

Data sources

Funding

The Phenoscape II project is funded by NSF collaborative grants DBI-1062404 and DBI-1062542 grant, and is supported by the National Evolutionary Synthesis Center (NESCent), NSF #EF-0905606. It's predecessor, the Phenoscape I project, was funded by NSF grant BDI-0641025, and supported by NESCent, NSF #EF-0423641.