Annotator tutorial topics

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Agenda- topics and software for curator training: Overview of curation workflow (see Sandrine’s slides) and software involved

Ontology development:

Review of limb terms for Amniote Anatomy Ontology (AMAO) and ontology update Amniote Taxonomy (with Peter Midford) and ontology update

Ontology development principles:

OBO foundry principles (orthogonality, single inheritance, versioning, etc...) OBO format (terms, synonyms, identifiers, dbxrefs...) Genus-differentia definitions (see [1]) Logical relationships

Online resources and mailing lists (bookmark)

Term trackers (VAO, VTO, PATO, CARO, Uberon) OBO Foundry BioPortal Mailing lists: Phenoscape-curators, Obo-edit Working Group, obo-anatomy, obo-discuss

Curation training

EQ annotation - Review wiki Guide to Character Annotation Phenex Matrix and free text entry in Mesquite and/OR direct import into Phenex SVN and ZigVersion Mendeley Phenoscape Curation Log in Google Docs Taxon lists update Endnote and publication identifiers

Ontology editing and updating

OBO-edit CVS, SmartCVS; SVN, ZigVersion Term request workflow; proposed ORB workflow Running the reasoner in Obo-Edit Protégé overview? Synchronization Tool