KB data integrity checks

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This page documents data integrity checks that would be useful to implement in a testing framework running against the Knowledgebase.

Data

Wherever the integrity checks are formulated as a query (SPARQL wherever possible), they use the RDF/OWL representation of the data in the following version: November 17, 2011

The most current version of the RDF/OWL is also in svn: http://phenoscape.svn.sourceforge.net/viewvc/phenoscape/trunk/data/rdf%2Bowl/

Integrity checks

Obsolete terms used in phenotype annotations

Check that there is no multiple inheritance within TTO

Relational qualities should have related entity

Non-relational qualities should not have related entity