Problem Log Format

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The Phenoscape Data Loader is responsible for loading curated NeXML data, along with the ontological definitions of the terms used in the curation. Often, the curated files are in varying degrees of completeness comprising records with blank placeholders for taxon names and phenotype descriptions. Such records are not inserted into the database, because there is no real use for them until they are complete. Instead, these records are entered into a Problem Log by the Data Loader which can then be viewed and worked upon by curators. This is an excerpt from such a Problem Log created during the execution of the Data Loader. The problematic, incomplete records are grouped under the name of the curated NeXML file which contained them.

The current problem log can be found here.

PROBLEM LOG

Buckup_1998.xml

  • Taxon: TTO:1030219 exhibits null phenotype
  • Null identifier for taxon: untitled exhibiting quality cartilaginous inhering in mesethmoid-prevomer joint
  • Null identifier for taxon: untitled exhibiting null phenotype
  • Taxon: TTO:1004541 exhibits null phenotype
  • Taxon: TTO:1004170 exhibits null phenotype
  • Null identifier for taxon: untitled exhibiting quality present inhering in antorbital
  • Taxon: TTO:1004398 exhibits null phenotype
  • Taxon: TTO:1030015 exhibits null phenotype
  • Taxon: TTO:1029666 exhibits null phenotype
  • Taxon: TTO:1020741 exhibits null phenotype
  • Taxon: TTO:1004142 exhibits null phenotype
  • Taxon: TTO:1004160 exhibits null phenotype
  • Taxon: TTO:1004148 exhibits null phenotype
  • Null identifier for taxon: untitled exhibiting quality present inhering in upper pharyngeal 4 tooth
  • Null identifier for taxon: untitled exhibiting quality absent inhering in rhinosphenoid

... ...

Castro_Vari_2004.xml

  • Taxon: TTO:1030219 exhibits null phenotype
  • Null identifier for taxon: untitled exhibiting quality cartilaginous inhering in mesethmoid-prevomer joint
  • Null identifier for taxon: untitled exhibiting null phenotype
  • Taxon: TTO:1004541 exhibits null phenotype**Taxon: TTO:1004170 exhibits null phenotype
  • Null identifier for taxon: untitled exhibiting quality present inhering in antorbital
  • Taxon: TTO:1004398 exhibits null phenotype
  • Taxon: TTO:1030015 exhibits null phenotype
  • Taxon: TTO:1029666 exhibits null phenotype
  • Taxon: TTO:1020741 exhibits null phenotype
  • Taxon: TTO:1004142 exhibits null phenotype
  • Taxon: TTO:1004160 exhibits null phenotype
  • Taxon: TTO:1004148 exhibits null phenotype
  • Null identifier for taxon: untitled exhibiting quality present inhering in upper pharyngeal 4 tooth

... ...

Langeani_1998.xml .. .. ..